FEATURE metal scanning

Source code

Note: This page is under construction
Example (precomputed run)
Step 1: Upload PDB file
Choose file:
Step 2: Select metal
Step 3: Select false positive rate
False positive rate:
Step 4: Select options
Filter high scoring hits using the zinc vs. calcium model. (This helps distinguish between zinc and calcium binding sites, potentially at the expense of some sensitivity.)
View interactive Jmol display (applet may take several seconds to load)
Step 5: Start scan

To cite the zinc model, please refer to:

Ebert, J.C. and Altman, R.B. (2008). Robust recognition of zinc binding sites in proteins Protein Science, 17(1) 54-65.

Other FEATURE publications

Please send questions, comments, and bug reports to: Russ Altman