WebFEATURE

Data

Data from our scans of the PDB and TargetDB structures are available for download here. Currently, you can download the data from the PDB scan either as flat files separated by model or PDB ID, or altogether as one gzipped flat file; TargetDB hits are currently available only as one flat file. If you want all of the data pertaining to a particular functional model or to a particular PDB structure, download the appropriate flat file.

Choose a model for which to download hits:

Enter a PDB ID for which to download hits:

Or, download all data: seqfeature-all-hits.tar.gz (1.7G)

Download top SeqFEATURE hits on TargetDB structures:

targetDB_hits.t xt

References

Wu S, Liang MP, Altman RB. "The SeqFEATURE library of 3D functional site models: comparison to existing methods and applications to protein function annotation." To be published

Liang MP, Banatao DR, Klein TE, Brutlag DL, Altman RB. "WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures." Nucleic Acids Res. 2003 Jul 1;31(13):3324-7. [PMID: 12824318]