WebFEATURE

(For assistance, please see our detailed instructions)

Step 1: Choose a structure

Structure: PDB ID or Upload (PDB format)

Step 2: Choose a type of site to scan for

(NOTE: Choosing "All_SeqFEATURE_models" may take longer to scan. If you have a large protein, you should choose "Email" runmode in Step 3 to have your results emailed to you.)

Model:

Step 3: Choose run mode

Run mode: Interactive Email:

Step 4: Submit and view results

WebFEATURE uses Jmol which requires Java 1.5.0 for visualization of results. These pages require Java and Javascript for proper interactivity. Visualization and interactivity can also be performed off-line using software packages such as RasMol, PyMol, and Chimera.

EXAMPLES:

Model	PDBID	Description	Runtime
Calcium binding site	3icb	Intestinal Calcium Binding Protein	5 secs
ATP binding site	1csn	Casein Kinase-1	45 secs
Chloride binding site	1pml	Tissue Plasminogen Activator Kringle 2	25 secs
Diffuse bound Mg for RNA	1ajf	P5B Stem-Loop from Group I Intron	5 secs
Site bound Mg for RNA	1gid	P4-P6 RNA Ribozyme Domain from Group I Intron	60 secs
Trypsin model (SeqFeature)	1bqy	Plasminogen Activator (Tsv-Pa) From Snake Venom	5 secs

Principal investigator: Russ Altman